Free 15-minute consultation with a chartered accountantGST notice? Reply before the deadlineTax audit · Transfer pricing · Virtual CFONRI tax for UAE · UK · USAAnna Nagar, Chennai · In person or online
CA IndiaC S Rushil & Co.Chartered Accountants

GST Returns · Clinics

GST Return Filing for Clinics in Chennai

Monthly returns for clinics that provide exempt healthcare services as well as taxable sales such as medicines and certain procedures.

Reviewed by CA Rushil C S, Chartered Accountant · Updated

Key facts

Exempt services
Many healthcare services are exempt under the GST notification
Taxable sales
Medicines, some cosmetic procedures and other taxable supplies are reported at the applicable rate
Returns covered
GSTR-1, GSTR-3B, and GSTR-9 where applicable
Input tax credit
Credit on equipment and supplies is claimed only where the rules allow it

What does GST return filing involve for clinics?

Many healthcare services are exempt from GST, but some supplies are taxable, such as certain cosmetic procedures and medicines sold over the counter. Clinics file GSTR-1 and GSTR-3B and must report exempt supplies correctly. Input tax credit on equipment and supplies needs checking too. We separate taxable and exempt sales before each filing.

What do we do for clinics?

Exempt and taxable split

Each service and sale is classified as exempt, nil-rated or taxable, so GSTR-1 reflects the correct treatment.

Medicine and pharmacy sales

Sales of medicines are recorded with the applicable rate and batch-level details where required.

Input tax credit review

Purchases of equipment, consumables and services are checked against the credit rules, with blocked credits identified.

Monthly reconciliation

Patient billing and bank receipts are reconciled to the sales figures before the return is filed.

How do we file the returns each month?

  1. 1

    Classify the services

    We list each service and check whether it is exempt, nil-rated or taxable under the GST rules.

  2. 2

    Collect billing data

    Patient billing, pharmacy sales and purchase bills are collected for the month.

  3. 3

    Prepare GSTR-1

    Taxable and exempt supplies are reported in the correct tables, with B2B and B2C details.

  4. 4

    Reconcile purchases

    Input tax credit is claimed on eligible purchases, and credit blocked by the rules is reversed where needed.

  5. 5

    File GSTR-3B

    Tax payable is computed and paid, and the working papers are kept for each month.

Returns for clinics and hospitals

ReturnWhat it reportsDue date
GSTR-1Taxable, exempt and nil-rated supplies, with B2B details11th of the following month (monthly filers)
GSTR-3BSummary of tax payable and credit claimed20th of the following month (monthly filers)
Credit reconciliationEquipment and supplies matched with purchase billsMonthly, before GSTR-3B
GSTR-9Annual return, where the turnover limit applies31 December after the financial year

Related services

FAQ

Frequently asked questions

Are clinic services exempt from GST?

Many healthcare services provided by clinics and hospitals are exempt under the GST notification, but the list is specific. Some services, such as certain cosmetic procedures, can be taxable. confirm each service against the notification on cbic-gst.gov.in before you bill.

Do I need to register for GST as a clinic?

Registration depends on whether your taxable supplies cross the registration limit and on the services you provide. A clinic with only exempt services may not need to register, but this depends on your situation. We confirm the limits on cbic-gst.gov.in and advise before you start billing.

How do I report exempt services in my return?

Exempt supplies are reported in GSTR-1 under the exempt category, not as taxable sales. Keeping them separate in your billing software makes the return correct and reduces queries from the department. We set up the categories with you before the first filing, so the first return reflects the right treatment.

Can I claim input tax credit on medical equipment?

Input tax credit on equipment and supplies depends on whether the supply is used for taxable or exempt services, and some credits are blocked by the rules. We check each purchase before claiming credit, and reverse any credit that is not allowed.

What if I sell medicines and also provide services?

Medicine sales are taxable and reported in the taxable category, while exempt services are reported separately. The two are kept apart in billing, so the return reflects the correct treatment for each. We check that the pharmacy and consultation reports reconcile to the sales figures every month.

Can you reconcile our billing software with the return?

Yes. We match the billing and pharmacy reports with the sales in GSTR-1 each month, so differences are found and explained before the return is filed. The reconciliation also shows which purchases carry credit and which do not, so the GSTR-3B claim is supported by bills.

On Google Maps

GST Returns in Anna Nagar, Chennai

C S Rushil & Co.
Old Door No. AP-890, New No. 18, J-Block, 1st Street, 13th Main Rd, Anna Nagar, Chennai - 600040
Plus code: 35PX+9V Chennai, Tamil Nadu
+91 72001 49711 · Monday – Saturday: 9:30 AM – 6:30 PM · Sunday: Closed

Google reviews

What clients say on Google

Read all reviews on Google →
May 2026
“I used to find tax compliance confusing and honestly a bit stressful, especially with how often regulations seem to change. Working with C S Rushil & Co has made a huge difference. They simplified everything, explained what actually matters for my business, and handled things smoothly from GST filings to more detailed financial reviews. What I appreciate most is their proactive approach they don’t just react, they guide you ahead of time. It’s given me a lot more clarity and confidence in managing my business finances.”

Gokul D.

GST & financial reviews · posted on Google

May 2026
“Working with C S Rushil & Co has completely transformed my approach to business; their proactive handling of my GST and TDS filings has replaced monthly deadline stress with total financial clarity.”

Mahalakshmi

GST & TDS filings · posted on Google

May 2026
“Excellent for ITR and GSTR filing. Professional, responsive and reliable. The entire process was smooth and hassle-free.”

Sughirtha D.

ITR & GSTR filing · posted on Google

Book a Consultation

15 minutes with a chartered accountant · in person in Anna Nagar or online

Get started

Let's simplify your compliance.

Talk to a chartered accountant in Chennai today — no obligation, no jargon.

No forms · reply on WhatsApp

Ask about GST Returns

Tap below and WhatsApp opens with your message already typed. A chartered accountant replies in the chat.